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Bernard, A.M. & Feldheim, K.A. & Shivji, M.S. (2015)
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Pinhal, D. & Shivji, M.S. & Vallinoto, M. & Chapman, D.D. & Gadig, O.B.F. & Martins, C. (2012)
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Pinhal, D. & Shivji, M.S. & Nachtigall, P.G. & Chapman, D.D. & Martins, C. (2012)
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Gray, T. & Bernard, A. & Clarke, S. & Chapman, D. & McAuley, R. & Shivji, M.S. (2012)
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Feldheim, K.A. & Chapman, D.D. & Sweet, D. & Fitzpatrick, S. & Prodöhl, P.A. & Shivji, M.S. & Snowden, B. (2010)
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Richards, V.P. & Henning, M. & Witzell, W. & Shivji, M.S. (2009)
Species Delineation and Evolutionary History of the Globally Distributed Spotted Eagle Ray (Aetobatus narinari). Journal of Heredity, 100(3), 273–283
DOI: 10.1093/jhered/esp005

Smith, W.D. & Bizzarro, J.J. & Richards, V.P. & Nielsen, J. & Márquez-Farías, J.F. & Shivji, M.S. (2009)
Morphometric convergence and molecular divergence: the taxonomic status and evolutionary history of Gymnura crebripunctata and Gymnura marmorata in the eastern Pacific Ocean. Journal of Fish Biology, 75(4), 761–783
DOI: 10.1111/j.1095-8649.2009.02300.x

Chapman, D.D. & Pinhal, D. & Shivji, M.S. (2009)
Tracking the fin trade: genetic stock identification in western Atlantic scalloped hammerhead sharks Sphyrna lewini. Endangered Species Research, 9(3), 221–228
DOI: 10.3354/esr00241

Wong, E.H.-K. & Shivji, M.S. & Hanner, R.H. (2009)
Identifying sharks with DNA barcodes: assessing the utility of a nucleotide diagnostic approach. Molecular Ecology Resources, 9(1), 243–256

Chapman, D.D. & Firchau, B. & Shivji, M.S. (2008)
Parthenogenesis in a large-bodied requiem shark, the blacktip Carcharhinus limbatus. Journal of Fish Biology, 73(6), 1473–1477
DOI: 10.1111/j.1095-8649.2008.02018.x

Beerkircher, L. & Cortés, E. & Shivji, M.S. (2008)
Case Study: Elasmobranch Bycatch in the Pelagic Longline Fishery off the Southeastern United States, 1992-1997. In M.D. Camhi, E.K. Pikitch, E.A. Babcock (Eds.) Sharks of the Open Ocean: Biology, Fisheries and Conservation. (pp. 242–246). Blackwell Publishing, Oxford, U.K.

Shivji, M.S. & Pank, M. & Natanson, L. & Kohler, N. & Stanhope, M. (2008)
Case Study: Rapid Species Identification of Pelagic Shark Tissues Using Genetic Approaches. In M.D. Camhi, E.K. Pikitch, E.A. Babcock (Eds.) Sharks of the Open Ocean: Biology, Fisheries and Conservation. (pp. 334–338). Blackwell Publishing, Oxford, U.K.

Sebastian, H. & Haye, P. & Shivji, M.S. (2008)
Characterization of the pelagic shark fin trade in north central Chile by genetic identification and trader surveys. Journal of Fish Biology, 73(10), 2293–2304
DOI: 10.1111/j.1095-8649.2008.02016.x

Chapman, D.D. & Shivji, M.S. & Louis, E. & Sommer, J. & Fletcher, H. & Prodöhl, P.A. (2007)
Virgin birth in a hammerhead shark. Biology Letters, 3(4), 425–427
DOI: 10.1098/rsbl.2007.0189

Chapman, D.D. & Pikitch, E.K. & Babcock, E.A. & Shivji, M.S. (2007)
Deep-diving and diel changes in vertical habitat use by Caribbean reef sharks, Carcharhinus perezi. Marine Ecology Progress Series, 344, 271–275
DOI: 10.3354/meps06941

Garla, R.C. & Chapman, D.D. & Shivji, M.S. & Wetherbee, B.M. & de Amorim, A.F. (2006)
Habitat of juvenile Caribbean reef sharks, Carcharhinus perezi, at two oceanic insular marine protected areas in the southwestern Atlantic Ocean: Fernando de Noronha Archipelago and Atol das Rocas, Brazil. Fisheries Research, 81(2–3), 236–241
DOI: 10.1016/j.fishres.2006.07.003

Hoelzel, A.R. & Shivji, M.S. & Magnussen, J. & Francis, M.P. (2006)
Low worldwide genetic diversity in the basking shark (Cetorhinus maximus). Biology Letters, 2(4), 639–642
DOI: 10.1098/rsbl.2006.0513

Clarke, S.C. & Magnussen, J.E. & Abercrombie, D.L. & Mcallister, M.K. & Shivji, M.S. (2006)
Identification of shark species composition and proportion in the Hong Kong shark fin market based on molecular genetics and trade records. Conservation Biology, 20(1), 201–211
DOI: 10.1111/j.1523-1739.2005.00247.x

Clarke, S.C. & Mcallister, M.K. & Milner-Gulland, E.J. & Kirkwood, G.P. & Michielsens, C.G.J. & Agnew, D.J. & Pikitch, E.K. & Nakano, H. & Shivji, M.S. (2006)
Global estimates of shark catches using trade records from commercial markets. Ecology Letters, 9(10), 1115–1126
DOI: 10.1111/j.1461-0248.2006.00968.x

Shivji, M.S. & Chapman, D.D. & Pikitch, E.K. & Raymond, P.W. (2005)
Genetic profiling reveals illegal international trade in fins of the great white shark, Carcharodon carcharias. Conservation Genetics, 6(6), 1035–1039
DOI: 10.1007/s10592-005-9082-9

Abercrombie, D.L. & Clarke, S.C. & Shivji, M.S. (2005)
Global-scale genetic identification of hammerhead sharks: Application to assessment of the international fin trade and law enforcement. Conservation Genetics, 6(5), 775–788
DOI: 10.1007/s10592-005-9036-2

Chapman, D.D. & Prodöhl, P.A. & Gelsleichter, J. & Shivji, M.S. (2005)
Mating systems of the bonnethead and scalloped hammerhead sharks in the southeast United States, as revealed by microsatellite DNA profiling [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Henning, M.L. & Shivji, M.S. (2005)
Streamlined genetic identification of ridgeback sharks for fisheries management and conservation [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Magnussen, J.E. & Shivji, M.S. (2005)
Efficient genetic identification of species and geographic origin of body parts from CITES and/or legislatively protected shark species [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Richards, V.P. & Shivji, M.S. (2005)
Strong population genetic structure in the southern stingray, Dasyatis americana, revealed by mtDNA control region sequences [Abstract]. American Elasmobranch Society 21th Annual Meeting, Tampa, Florida

Pikitch, E.K. & Chapman, D.D. & Babcock, E.A. & Shivji, M.S. (2005)
Habitat use and demographic population structure of elasmobranchs at a Caribbean atoll (Glover's Reef, Belize). Marine Ecology Progress Series, 302, 187–197
DOI: 10.3354/meps302187

Chapman, D.D. & Pikitch, E.K. & Babcock, F. & Shivji, M.S. (2005)
Marine reserve design and evaluation using automated acoustic telemetry: A case-study involving coral reef-associated sharks in the mesoamerican Caribbean. Marine Technology Society Journal: 39(1): 42–55
DOI: 10.4031/002533205787521640

Chapman, D.D. & Prodöhl, P.A. & Gelsleichter, J. & Manire, C.A. & Shivji, M.S. (2004)
Predominance of genetic monogamy by females in a hammerhead shark, Sphyrna tiburo: implications for shark conservation. Molecular Ecology, 13(7), 1965–1974
DOI: 10.1111/j.1365-294X.2004.02178.x

Douady, C.J. & Dosay, M. & Shivji, M.S. & Stanhope, M.J. (2003)
Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Molecular Phylogenetics and Evolution, 26(2), 215–221
DOI: 10.1016/S1055-7903(02)00333-0

Chapman, D.D. & Corcoran, M.J. & Harvey, G.M. & Malan, S. & Shivji, M.S. (2003)
Mating behavior of southern stingrays, Dasyatis americana (Dasyatidae). Environmental Biology of Fishes, 68(2), 241–245
DOI: 10.1023/A:1027332113894

Chapman, D.D. & Abercrombie, D.L. & Douady, C.J. & Pikitch, E.K. & Stanhopen, M.J. & Shivji, M.S. (2003)
A streamlined, bi-organelle, multiplex PCR approach to species identification: Application to global conservation and trade monitoring of the great white shark, Carcharodon carcharias. Conservation Genetics, 4(4), 415–425
DOI: 10.1023/A:1024771215616

Shivji, M.S. & Clarke, S. & Pank, M. & Natanson, L. & Kohler, N. & Stanhope, M. (2002)
Genetic identification of pelagic shark body parts for conservation and trade monitoring. Conservation Biology, 16(4), 1036–1047
DOI: 10.1046/j.1523-1739.2002.01188.x

Pank, M. & Stanhope, M.J. & Natanson, L.J. & Kohler, N.E. & Shivji, M.S. (2001)
Rapid and simultaneous identification of body parts from the morphologically similar sharks Carcharhinus obscurus and Carcharhinus plumbeus (Carcharhinidae) using multiplex PCR. Marine Biotechnology, 3(3), 231–240
DOI: 10.1007/s101260000071

Chapman, D.D. & Prodohl, P. & Manire, C.A. & Shivji, M.S. (2000)
Microsatellite DNA profiling in the bonnethead shark, Sphyrna tiburo: application to mating system and population structure studies [Abstract]. American Elasmobranch Society 16th Annual Meeting, 14–20 June 2000, La Paz, Mexico

Shivji, M.S. & Stanhope, M.J. & Rogers, S.0. (1997)
Group I introns ("spintrons") are present in shark nuclear ribosomal DNA internal transcribed spacers [Abstract]. American Elasmobranch Society 13th Annual Meeting, 26 June–2 July 1997, Seattle, Washington